2026

• oee4 prq49-20stint joint exceedance top 20 video
  

  Jul 26, 2026

• wellcome leap resistance networks LOI budget
  

  Jul 21, 2026

• allele evo/epi meeting slides TBD
  

  Jul 15, 2026

• welcomme resistance networks graphics
  

  Jul 5, 2026

• welcomme LOI
  

  Jul 4, 2026

• evo-epi meeting slides July 14, 2026
  

  Jul 1, 2026

• allele evo/epi figures
  

  Jun 17, 2026

• GPTP 2026 Slides
  

  Jun 3, 2026

• allele evo/epi visual abstract
  

  Jun 1, 2026

• 2026 ERA town hall
  

  May 17, 2026

• Alife Edu 2026 Talk
  

  May 17, 2026

• Alife Edu 2026 Lightning Talk
  

  May 17, 2026

• evo-epi meeting slides June 1, 2026
  

  May 8, 2026

• evo-epi meeting slides May 4, 2026
  

  Apr 29, 2026

• EXPRESS NCE Request
  

  Apr 27, 2026

• EXPRESS Progress Report
  

  Apr 27, 2026

• Evo-epi Meeting Slides
  

  Mar 25, 2026

• MICDE Catalyst 2026
  

  Mar 24, 2026

• Sync-up Meeting Slides
  

  Mar 23, 2026

• Sampling- and Estimation-based Strategies for Data Collection in Wafer-Scale Evolution Simulations @ PSC
  

  Feb 28, 2026

• evo-epi meeting slides
  

  Feb 27, 2026

• evo-epi meeting notes
  

  Feb 23, 2026

• 2026-02-23 allele-abm-mutator-host-subpop notebook
  

  Feb 23, 2026

• 2026-02-23 evo-epi meeting
  

  Feb 23, 2026

• OEE4 case study video
  

  Jan 30, 2026

• OEE4 Slides for Jan 30, 2026
  

  Jan 27, 2026

• OEE4 Draft
  

  Jan 21, 2026

• OEE4 Manuscript Lab Meeting Slides
  

  Jan 21, 2026

• ByteBoost and Back Again Slides
  

  Jan 16, 2026

• Evo-Epidemiology Meeting Slides Jan 2026
  

  Jan 12, 2026

2025

• CodeHS intro to colab
  

  Dec 23, 2025

• allele-abm.ipynb open in colab
  

  Dec 23, 2025

• allele-abm.ipynb pinned gist
  

  Dec 23, 2025

• nbsanity allele-abm.ipynb gist
  

  Dec 23, 2025

• Epi Modeling Meeting Dec 11
  

  Dec 11, 2025

• oee4 mutagenic design and shifted replays google slides
  

  Nov 23, 2025

• CA phylogeny brainstorming slide deck
  

  Nov 16, 2025

• taxonium wse-async-ga 2025-10-20-mls-strong-fossils nonfocal trait csamp=32768
  

  Oct 24, 2025

• taxonium wse-async-ga 2025-10-20-mls-strong-fossils focal trait csamp=32768
  

  Oct 24, 2025

• SC WSE Hypermutator Extended Abstract
  

  Sep 29, 2025

• arXiv: Extending a Phylogeny-based Method for Detecting Signatures of Multi-level Selection for Applications in Artificial Life
  

  Sep 20, 2025

• arXiv: A Scalable Trie Building Algorithm for High-Throughput Phyloanalysis of Wafer-Scale Digital Evolution Experiments
  

  Sep 20, 2025

• OEE4/NPJ Meeting Slides
  

  Sep 15, 2025

• Bio Theory for EC Draft Outline
  

  Aug 21, 2025

• Review of Bio Theory for EC Zoom 2
  

  Aug 21, 2025

• PSC Science Highlights: Hypermutator Dynamics
  

  Aug 20, 2025

• hstrat-reconstruction-algo manuscript v1.1.0
  

  Aug 20, 2025

• wse-evo-epi sketch Slides
  

  Aug 15, 2025

• Review of Bio Theory in EC Zoom 1 Slides
  

  Aug 8, 2025

• ByteBoost 2025 Talk
  

  Aug 3, 2025

• EC Theory Arbitrage overleaf
  

  Jul 7, 2025

• EC Theory Arbitrage invite list
  

  Jul 7, 2025

• CS 361: Artificial Life and Digital Evolution @ Carleton Slides
  

  Jun 4, 2025

• CS 361: Artificial Life and Digital Evolution @ Carleton Slides
  

  May 24, 2025

• sample dev multilevel selection notebook permalink
  

  Apr 7, 2025

• sample dev multilevel selection notebook permalink
  

  Mar 31, 2025

• sample dev hstrat agentless notebook permalink
  

  Mar 26, 2025

• hstrat agentless lenia viz, dense
  

  Mar 26, 2025

• hstrat agentless lenia animation, sparse
  

  Mar 26, 2025

• IEEE Alife Poster PDF (rasterized)
  

  Mar 17, 2025

• IEEE Alife Poster PDF
  

  Mar 17, 2025

• IEEE ALIFE-CIS 2025 poster
  

  Mar 16, 2025

• IEEE ALIFE-CIS 2025 symposium slides
  

  Mar 16, 2025

• BEACON seminar slides
  

  Feb 21, 2025

• hstrat-evolutionary-inference mouseover-based highlighting of corresponding clades between reconstructions and reference
  

  Feb 10, 2025

• extinct binder/wse-denovo-spatial2d-explicitsite-timeseries/a=traits+nmut=16+rep=de9feffb-0744-4d41-9f87-f86269f667e3+ext=.gif
  

  Feb 6, 2025

• survived binder/wse-denovo-spatial2d-explicitsite-timeseries/a=traits+nmut=12+rep=f61573d1-cf9e-4c0f-91c3-d91f91b81f7e+ext=.gif
  

  Feb 6, 2025

• extinct binder/wse-denovo-spatial2d-explicitsite-timeseries/a=traits+nmut=14+rep=39a89ca6-a1b5-4b32-ae5f-f0dbb40ba027+ext=.gif
  

  Feb 6, 2025

• survive binder/wse-denovo-spatial2d-explicitsite-timeseries/a=traits+nmut=14+rep=5dc8e084-0382-4d7b-9b76-6c3902ca3c1d+ext=.gif
  

  Feb 6, 2025

2024

• Curriculum Vitae
  

  Dec 5, 2024

• Schmidt Fellowship Committee Meeting F24
  

  Dec 5, 2024

• Supercomputing Poster Paper
  

  Dec 4, 2024

• Tilted DStream Policy Animation with Reservations, 16 site buffer
  

  Nov 20, 2024

• Stretched DStream Policy Animation with Reservations, 16 site buffer
  

  Nov 20, 2024

• Steady DStream Policy Animation w/ Reservations, 16 site buffer
  

  Nov 20, 2024

• SDSU Talk slides
  

  Nov 15, 2024

• EEB Tuesday Talk slides
  

  Nov 5, 2024

• Campus Champions Slides for ByteBoost Hypermutator Project
  

  Oct 9, 2024

• Tilted DStream Policy Animation with Reservations, 32 site buffer
  

  Oct 4, 2024

• Stretched DStream Policy Animation with Reservations, 32 site buffer
  

  Oct 4, 2024

• Steady DStream Policy Animation w/ Reservations, 32 site buffer
  

  Oct 4, 2024

• Tilted DStream Policy Animation, 32 site buffer
  

  Oct 4, 2024

• Stretched DStream Policy Animation, 32 site buffer
  

  Oct 4, 2024

• Steady DStream Policy Animation, 32 site buffer
  

  Oct 4, 2024

• Supplemental Material for Testing the Inference Accuracy of Accelerator-friendly Approximate Phylogeny Tracking
  

  Sep 16, 2024

• Biodata Carpentry
  

  Sep 16, 2024

• MIDAS Bootcamp Survey of Software Engineering Tools
  

  Sep 16, 2024

• Human Genetics Postdoctoral Symposium Slides
  

  Sep 12, 2024

• ByteBoost '24 Slides
  

  Aug 5, 2024

• MI-LSAMP Data Science Python Intro 3
  

  Aug 1, 2024

• MI-LSAMP Data Science Python Intro 2
  

  Aug 1, 2024

• MI-LSAMP Data Science Python Intro 1
  

  Aug 1, 2024

• MI-LSAMP Data Science Ethics Case Study 5
  

  Jul 24, 2024

• MI-LSAMP Data Science Ethics Case Study 4
  

  Jul 24, 2024

• MI-LSAMP Data Science Ethics Case Study 3
  

  Jul 24, 2024

• MI-LSAMP Data Science Ethics Case Study 2
  

  Jul 24, 2024

• MI-LSAMP Data Science Ethics Case Study 1
  

  Jul 24, 2024

• ALIFE 2024 Phylogeny Tutorial
  

  Jul 24, 2024

• Materials for Methods to Estimate Cryptic Sequence Complexity (ALIFE 2024)
  

  Jul 22, 2024

• Materials for Trackable Agent-based Evolution Models at Wafer Scale (ALIFE 2024)
  

  Jul 22, 2024

• ALIFE 2024 Digital Evolution at Wafer Scale
  

  Jul 22, 2024

• MIDAS Marathon Data
  

  Jun 21, 2024

• MIDAS Data Visualization Scavenger Hunt
  

  Jun 13, 2024

• One Dataset, Visualized 25 Ways
  

  Jun 13, 2024

• Tanzania DHS Colab Notebook
  

  Jun 3, 2024

• MIDAS Dataviz Website
  

  Jun 2, 2024

• MIDAS Dataviz Seminar Slides
  

  Jun 2, 2024

• Example GitHub Repository
  

  May 6, 2024

• Example WAVES PR
  

  May 6, 2024

• Git Cheat Sheet
  

  May 6, 2024

• jekyll-class-blog repository
  

  May 5, 2024

• Hosting a Public-facing Class Blog with GitHub pages and Jekyll
  

  May 5, 2024

• CSE 491 blog
  

  May 3, 2024

• WAVES blog
  

  May 3, 2024

• Trackable Agent-based Evolution Models at Wafer Scale, GitHub anonymized
  

  Apr 15, 2024

• Trackable Agent-based Evolution Models at Wafer Scale, OSF anonymized
  

  Apr 15, 2024

• WSE hsurf validation nootebook
  

  Mar 6, 2024

• async GA kernel v0.1.0
  

  Mar 4, 2024

2023

• DendroPy JIT Proof-of-Concept
  

  Oct 13, 2023

• conduit quality of service notebooks
  

  Oct 4, 2023

• conduit quality of service notebooks
  

  Oct 4, 2023

• alife 2023 hstrat inference landing page
  

  Jul 24, 2023

• hstrat ping demo for alife 2023
  

  Jul 23, 2023

• Matchmaker, Matchmaker Article @ Springer
  

  Jul 16, 2023

• hstrat surface concept slides/graphics
  

  Jun 20, 2023

• hstrat JOSS paper
  

  Jun 2, 2023

• GPTP 2023 slides
  

  Jun 1, 2023

• hstrat interactive reconstructions and references
  

  May 31, 2023

2022

• Committee Dissertation Supplement Download
  

  Nov 17, 2022

• Committee Dissertation Manuscript Download
  

  Nov 17, 2022

• Committee Dissertation Download
  

  Nov 17, 2022

• Defense Flyer
  

  Nov 14, 2022

• Guest Talk CS 361: Artificial Life and Digital Evolution
  

  Nov 13, 2022

• Avida ReLSO colorblind alt
  

  Nov 5, 2022

• CS25: Transformers United
  

  Nov 4, 2022

• IBM Deep Learning with Python and PyTorch EdX Course
  

  Nov 3, 2022

• PyTorch Lightning Tutorial Series
  

  Nov 3, 2022

• HuggingFace MOOC on Transformer Methodology
  

  Nov 3, 2022

• Built with Empirical Gallery
  

  Nov 2, 2022

• Thinking About Risks From AI: Accidents, Misuse and Structure
  

  Nov 2, 2022

• Learning an Evolvable Genotype-Phenotype Map
  

  Nov 2, 2022

• WAVES Workshop Learning Outcomes
  

  Nov 2, 2022

• Hereditary Stratigraph ALIFE 2022 Slides
  

  Jul 17, 2022

• Hereditary Stratigraph Evolution 2022 Slides
  

  Jun 22, 2022

• Hereditary Stratigraph Concept BinderHub
  

  May 21, 2022

• EEB Research Symposium Slides
  

  May 1, 2022

• Hereditary Stratigraph Reconstruction Viz
  

  Mar 13, 2022

• Hereditary Stratigraph MRCA Uncertainty Visualization
  

  Mar 13, 2022

2021

• Trivia Results
  

  Nov 9, 2021

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  Jun 2, 2021

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• bucket=prq49+series=16005+stint=2+view=simulation+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=2+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=19+view=video+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=19+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=19+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=19+view=simulation+what=population
  

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• bucket=prq49+series=16005+stint=18+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=18+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=18+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=18+view=simulation+what=population
  

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• bucket=prq49+series=16005+stint=17+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=17+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=17+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=17+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=16+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=16+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=16+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=16+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=15+view=video+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=15+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=15+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=15+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=14+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=14+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=14+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=14+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=13+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=13+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=13+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=13+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=12+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=12+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=12+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=12+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=11+view=video+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=11+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=11+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=11+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=100+view=video+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=100+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=100+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=100+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=10+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=10+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=10+view=simulation+what=specimen
  

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• bucket=prq49+series=16005+stint=10+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=1+view=video+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=1+view=text+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=1+view=simulation+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=1+view=simulation+what=population
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=0+view=video+what=specimen
  

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• bucket=prq49+series=16005+stint=0+view=text+what=specimen
  

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• bucket=prq49+series=16005+stint=0+view=simulation+what=specimen
  

  Jun 2, 2021

• bucket=prq49+series=16005+stint=0+view=simulation+what=population
  

  Jun 2, 2021

• Phylogenetic Fingerprints Demo
  

  Apr 30, 2021

• WAVES Project Matching Questionnaire
  

  Apr 30, 2021

• WAVES Onboarding Survey
  

  Apr 30, 2021

• WAVES WhenIsGood Poll
  

  Apr 30, 2021

• WAVES Slack Invite Link
  

  Apr 30, 2021

• WAVES Letters Upload
  

  Feb 17, 2021

• WAVES Application Upload
  

  Feb 17, 2021

• WAVES Applicant Demographic Questionnaire
  

  Feb 17, 2021

• Spartans Will Endorsement Letter
  

  Feb 7, 2021

• WAVES DEI Draft
  

  Jan 20, 2021

• C++ Discussion Topic Ideas
  

  Jan 17, 2021

2020

• MSU Undergraduate Researcher Survey
  

  May 15, 2020

• WAVES Slack Join Link
  

  May 15, 2020

• WAVES Group Meeting WhenIsGood
  

  May 15, 2020

• WAVES Zoom Room
  

  May 15, 2020

• WAVES Onboarding Survey
  

  May 15, 2020

• dishtiny interconnect development system overview
  

  Apr 24, 2020

• batch 1042 case study overview animation
  

  Apr 24, 2020

• batch 2032 case study overview animation
  

  Apr 24, 2020

• batch 1042 wild type versus ko_sm15_i0,1,3,4,6,8,9,11 knockout competition
  

  Apr 23, 2020

• batch 1042 wild type versus m7_i17 knockout competition
  

  Apr 23, 2020

• batch 1042 wild type versus ko_t19 knockout competition
  

  Apr 23, 2020

• batch 1042 wild type versus wild type competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_bcstfwdspiker knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_bcstexternal knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_sendexternal knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_bcstinternal knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_sendinternal knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_fork knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8_call knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m14_i0 knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus m5_i8 knockout competition
  

  Apr 23, 2020

• batch 2032 wild type versus wt knockout competition
  

  Apr 23, 2020

• batch 1042 adaptive interconnect sharing in-browser simulation
  

  Apr 22, 2020

• batch 2032 adaptive interconnect messaging in-browser simulation
  

  Apr 22, 2020

• batch 2032 adaptive interconnect messaging 53vgh DISHTINY interconenct animation
  

  Apr 22, 2020

• regulation case study kqvmn DISHTINY population
  

  Apr 14, 2020

• sweep lifecycle g58xk DISHTINY animation
  

  Jan 29, 2020

• coalesce lifecycle g58xk DISHTINY animation
  

  Jan 29, 2020

• naive lifecycle g58xk DISHTINY animation
  

  Jan 29, 2020

• burst lifecycle g58xk DISHTINY population
  

  Jan 29, 2020

• sweep lifecycle g58xk DISHTINY population
  

  Jan 29, 2020

• adjoin lifecycle g58xk DISHTINY population
  

  Jan 29, 2020

• naive lifecycle g58xk DISHTINY population
  

  Jan 29, 2020

• burst lifecycle g58xk DISHTINY animation
  

  Jan 29, 2020

• Nested-Wave g58xk DISHTINY treatment
  

  Jan 28, 2020

• Nested-Even g58xk DISHTINY treatment
  

  Jan 28, 2020

• Flat-Wave g58xk DISHTINY treatment
  

  Jan 28, 2020

• gene regulation g58xk DISHTINY animation
  

  Jan 28, 2020

• resource-sensing g58xk DISHTINY animation
  

  Jan 28, 2020

• WT vs KO assay g58xk DISHTINY gene regulation pca animation
  

  Jan 28, 2020

• intracell messaging g58xk DISHTINY animation
  

  Jan 28, 2020

• intercell messaging g58xk DISHTINY animation
  

  Jan 28, 2020

• intercell messaging g58xk DISHTINY animation
  

  Jan 28, 2020

• apoptosis g58xk DISHTINY animation
  

  Jan 28, 2020

• apoptosis g58xk DISHTINY animation
  

  Jan 28, 2020

• Nested-Wave g58xk DISHTINY treatment
  

  Jan 28, 2020

• Nested-Even g58xk DISHTINY treatment
  

  Jan 28, 2020

• Flat-Wave g58xk DISHTINY treatment
  

  Jan 28, 2020

• Flat-Even g58xk DISHTINY treatment
  

  Jan 28, 2020

• resource-sensing g58xk DISHTINY population
  

  Jan 28, 2020

• gene regulation g58xk DISHTINY population
  

  Jan 28, 2020

• intracell messaging g58xk DISHTINY population
  

  Jan 28, 2020

• intercell messaging g58xk DISHTINY population
  

  Jan 28, 2020

• intercell messaging g58xk DISHTINY population
  

  Jan 28, 2020

• apoptosis g58xk DISHTINY population
  

  Jan 28, 2020

• apoptosis g58xk DISHTINY population
  

  Jan 28, 2020

• test redirect to nyan cat
  

  Jan 28, 2020